activity
20162023
most citedMolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction

678 citations · 2.6k across the 71 of their papers we have counts for

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Showing 2022Show all

7 papers · 1 filter

q-bio.QM2022★ 28 cited

Reinforced Genetic Algorithm for Structure-based Drug Design

Tianfan Fu, Wenhao Gao, Connor W. Coley +1

Structure-based drug design (SBDD) aims to discover drug candidates by finding molecules (ligands) that bind tightly to a disease-related protein (targets), which is the primary ap…

stat.ML2022★ 3 cited

Conformal Prediction with Temporal Quantile Adjustments

Zhen Lin, Shubhendu Trivedi, Jimeng Sun

We develop Temporal Quantile Adjustment (TQA), a general method to construct efficient and valid prediction intervals (PIs) for regression on cross-sectional time series data. Such…

cs.LG2022★ 1 cited

GOCPT: Generalized Online Canonical Polyadic Tensor Factorization and Completion

Chaoqi Yang, Cheng Qian, Jimeng Sun

Low-rank tensor factorization or completion is well-studied and applied in various online settings, such as online tensor factorization (where the temporal mode grows) and online t…

cs.LG2022

Clinical trial site matching with improved diversity using fair policy learning

Rakshith S Srinivasa, Cheng Qian, Brandon Theodorou +4

The ongoing pandemic has highlighted the importance of reliable and efficient clinical trials in healthcare. Trial sites, where the trials are conducted, are chosen mainly based on…

cs.LG2022★ 27 cited

MolGenSurvey: A Systematic Survey in Machine Learning Models for Molecule Design

Yuanqi Du, Tianfan Fu, Jimeng Sun +1

Molecule design is a fundamental problem in molecular science and has critical applications in a variety of areas, such as drug discovery, material science, etc. However, due to th…

cs.SI2022★ 7 cited

PopNet: Real-Time Population-Level Disease Prediction with Data Latency

Junyi Gao, Cao Xiao, Lucas M. Glass +1

Population-level disease prediction estimates the number of potential patients of particular diseases in some location at a future time based on (frequently updated) historical dis…

cs.LG2022★ 1 cited

JULIA: Joint Multi-linear and Nonlinear Identification for Tensor Completion

Cheng Qian, Kejun Huang, Lucas Glass +2

Tensor completion aims at imputing missing entries from a partially observed tensor. Existing tensor completion methods often assume either multi-linear or nonlinear relationships…