activity
20142023
most citedBiologically-informed neural networks guide mechanistic modeling from sparse experimental data

176 citations · 683 across the 36 of their papers we have counts for

collaborators

40 papers

q-bio.MN2023

Smoothing in linear multicompartment biological processes subject to stochastic input

Alexander P Browning, Adrianne L Jenner, Ruth E Baker +1

Many physical and biological systems rely on the progression of material through multiple independent stages. In viral replication, for example, virions enter a cell to undergo a c…

q-bio.TO2023

Quantifying tissue growth, shape and collision via continuum models and Bayesian inference

Carles Falcó, Daniel J. Cohen, José A. Carrillo +1

Although tissues are usually studied in isolation, this situation rarely occurs in biology, as cells, tissues, and organs, coexist and interact across scales to determine both shap…

q-bio.CB2023

Travelling waves in a coarse-grained model of volume-filling cell invasion: Simulations and comparisons

Rebecca M. Crossley, Philip K. Maini, Tommaso Lorenzi +1

Many reaction-diffusion models produce travelling wave solutions that can be interpreted as waves of invasion in biological scenarios such as wound healing or tumour growth. These…

physics.bio-ph2023

Energy translation symmetries and dynamics of separable autonomous two-dimensional ODEs

Johannes G. Borgqvist, Fredrik Ohlsson, Ruth E. Baker

We study symmetries in the phase plane for separable, autonomous two-state systems of ordinary differential equations (ODEs). We prove two main theoretical results concerning the e…

math.DS2022★ 1 cited

On the correspondence between symmetries of two-dimensional autonomous dynamical systems and their phase plane realisations

Fredrik Ohlsson, Johannes G. Borgqvist, Ruth E. Baker

We consider the relationship between symmetries of two-dimensional autonomous dynamical system in two common formulations; as a set of differential equations for the derivative of…

q-bio.CB2022

Dynamic fibronectin assembly and remodeling by leader neural crest cells prevents jamming in collective cell migration

W. Duncan Martinson, Rebecca McLennan, Jessica M. Teddy +6

Collective cell migration plays an essential role in vertebrate development, yet the extent to which dynamically changing microenvironments influence this phenomenon remains unclea…