176 citations · 683 across the 36 of their papers we have counts for
7 papers · 1 filter
Optimal quantification of contact inhibition in cell populations
David J. Warne, Ruth E. Baker, Matthew J. Simpson
Contact inhibition refers to a reduction in the rate of cell migration and/or cell proliferation in regions of high cell density. Under normal conditions contact inhibition is asso…
Topology-dependent density optima for efficient simultaneous network exploration
Daniel B. Wilson, Ruth E. Baker, Francis G. Woodhouse
A random search process in a networked environment is governed by the time it takes to visit every node, termed the cover time. Often, a networked process does not proceed in isola…
The impact of temporal sampling resolution on parameter inference for biological transport models
Jonathan U. Harrison, Ruth E. Baker
Imaging data has become widely available to study biological systems at various scales, for example the motile behaviour of bacteria or the transport of mRNA, and it has the potent…
Robustly simulating biochemical reaction kinetics using multi-level Monte Carlo approaches
Christopher Lester, Christian A. Yates, Ruth E. Baker
In this work, we consider the problem of estimating summary statistics to characterise biochemical reaction networks of interest. Such networks are often described using the framew…
Scalable population-level modeling of biological cells incorporating mechanics and kinetics in continuous time
Stefan Engblom Daniel B. Wilson, Ruth E. Baker
The processes taking place inside the living cell are now understood to the point where predictive computational models can be used to gain detailed understanding of important biol…
An automatic adaptive method to combine summary statistics in approximate Bayesian computation
Jonathan U Harrison, Ruth E Baker
To infer the parameters of mechanistic models with intractable likelihoods, techniques such as approximate Bayesian computation (ABC) are increasingly being adopted. One of the mai…