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cond-mat1998
Optimizing Smith-Waterman alignments
Rolf Olsen, Terence Hwa, Michael Lassig
Mutual correlation between segments of DNA or protein sequences can be detected by Smith-Waterman local alignments. We present a statistical analysis of alignment of such sequences…
physics.bio-ph1998★ 2 cited
Scaling Laws and Similarity Detection in Sequence Alignment with Gaps
Dirk Drasdo, Terence Hwa, Michael Lassig
We study the problem of similarity detection by sequence alignment with gaps, using a recently established theoretical framework based on the morphology of alignment paths. Alignme…