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q-bio.GN2021
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions
Mattia Prosperi, Simone Marini, Christina Boucher +1
Whole genome sequencing (WGS) is quickly becoming the customary means for identification of antimicrobial resistance (AMR) due to its ability to obtain high resolution information…
cs.DS2021
Computing the original eBWT faster, simpler, and with less memory
Christina Boucher, Davide Cenzato, Zsuzsanna Lipták +2
Mantaci et al. [TCS 2007] defined the eBWT to extend the definition of the BWT to a collection of strings, however, since this introduction, it has been used more generally to desc…