7 citations · 9 across the 14 of their papers we have counts for
17 papers
Another virtue of wavelet forests?
Christina Boucher, Travis Gagie, Aaron Hong +2
A wavelet forest for a text over an alphabet takes bits of space and supports access and rank on in time. Kärkkäinen and…
Acceleration of FM-index Queries Through Prefix-free Parsing
Aaron Hong, Marco Oliva, Dominik Köppl +3
FM-indexes are a crucial data structure in DNA alignment, for example, but searching with them usually takes at least one random access per character in the query pattern. Ferragin…
Joint Application of the Target Trial Causal Framework and Machine Learning Modeling to Optimize Antibiotic Therapy: Use Case on Acute Bacterial Skin and Skin Structure Infections due to Methicillin-resistant Staphylococcus aureus
Inyoung Jun, Simone Marini, Christina A. Boucher +3
Bacterial infections are responsible for high mortality worldwide. Antimicrobial resistance underlying the infection, and multifaceted patient's clinical status can hamper the corr…
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions
Mattia Prosperi, Simone Marini, Christina Boucher +1
Whole genome sequencing (WGS) is quickly becoming the customary means for identification of antimicrobial resistance (AMR) due to its ability to obtain high resolution information…
Computing the original eBWT faster, simpler, and with less memory
Christina Boucher, Davide Cenzato, Zsuzsanna Lipták +2
Mantaci et al. [TCS 2007] defined the eBWT to extend the definition of the BWT to a collection of strings, however, since this introduction, it has been used more generally to desc…
PHONI: Streamed Matching Statistics with Multi-Genome References
Christina Boucher, Travis Gagie, Tomohiro I +6
Computing the matching statistics of patterns with respect to a text is a fundamental task in bioinformatics, but a formidable one when the text is a highly compressed genomic data…