7 citations · 9 across the 14 of their papers we have counts for
3 papers · 1 filter
Misassembly Detection using Paired-End Sequence Reads and Optical Mapping Data
Martin D. Muggli, Simon J. Puglisi, Roy Ronen +1
A crucial problem in genome assembly is the discovery and correction of misassembly errors in draft genomes. We develop a method that will enhance the quality of draft genomes by i…
Variable-Order de Bruijn Graphs
Christina Boucher, Alex Bowe, Travis Gagie +2
The de Bruijn graph of a set of strings is a key data structure in genome assembly that represents overlaps between all the -length substrings of . Construction and…
HyDA-Vista: Towards Optimal Guided Selection of k-mer Size for Sequence Assembly
Seyed Basir Shariat Razavi, Narjes Sadat Movahedi Tabrizi, Hamidreza Chitsaz +1
Motivation: Intimately tied to assembly quality is the complexity of the de Bruijn graph built by the assembler. Thus, there have been many paradigms developed to decrease the comp…