269 citations · 3.4k across the 186 of their papers we have counts for
3 papers · 1 filter
BioDynaMo: a general platform for scalable agent-based simulation
Lukas Breitwieser, Ahmad Hesam, Jean de Montigny +10
Motivation: Agent-based modeling is an indispensable tool for studying complex biological systems. However, existing simulators do not always take full advantage of modern hardware…
Shouji: A Fast and Efficient Pre-Alignment Filter for Sequence Alignment
Mohammed Alser, Hasan Hassan, Akash Kumar +2
Motivation: The ability to generate massive amounts of sequencing data continues to overwhelm the processing capability of existing algorithms and compute infrastructures. In this…
Optimal Seed Solver: Optimizing Seed Selection in Read Mapping
Hongyi Xin, Richard Zhu, Sunny Nahar +5
Motivation: Optimizing seed selection is an important problem in read mapping. The number of non-overlapping seeds a mapper selects determines the sensitivity of the mapper while t…