65 citations · 376 across the 32 of their papers we have counts for
33 papers
RawBench: A Comprehensive Benchmarking Framework for Raw Nanopore Signal Analysis Techniques
Furkan Eris, Ulysse McConnell, Can Firtina +1
Nanopore sequencing technologies continue to advance rapidly, offering critical benefits such as real-time analysis, the ability to sequence extremely long DNA fragments (up to mil…
A decentralized future for the open-science databases
Gaurav Sharma, Viorel Munteanu, Nika Mansouri Ghiasi +18
Continuous and reliable access to curated biological data repositories is indispensable for accelerating rigorous scientific inquiry and fostering reproducible research. Centralize…
CiMBA: Accelerating Genome Sequencing through On-Device Basecalling via Compute-in-Memory
William Andrew Simon, Irem Boybat, Riselda Kodra +8
As genome sequencing is finding utility in a wide variety of domains beyond the confines of traditional medical settings, its computational pipeline faces two significant challenge…
FIESTA: Fisher Information-based Efficient Selective Test-time Adaptation
Mohammadmahdi Honarmand, Onur Cezmi Mutlu, Parnian Azizian +2
Robust facial expression recognition in unconstrained, "in-the-wild" environments remains challenging due to significant domain shifts between training and testing distributions. T…
Rawsamble: Overlapping and Assembling Raw Nanopore Signals using a Hash-based Seeding Mechanism
Can Firtina, Maximilian Mordig, Harun Mustafa +7
Raw nanopore signal analysis is a common approach in genomics to provide fast and resource-efficient analysis without translating the signals to bases (i.e., without basecalling).…
Ensemble Modeling of Multiple Physical Indicators to Dynamically Phenotype Autism Spectrum Disorder
Marie Huynh, Aaron Kline, Saimourya Surabhi +6
Early detection of autism, a neurodevelopmental disorder marked by social communication challenges, is crucial for timely intervention. Recent advancements have utilized naturalist…