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Geometric Multiscale Community Detection: Markov Stability and Vector Partitioning
Zijing Liu, Mauricio Barahona
Multiscale community detection can be viewed from a dynamical perspective within the Markov Stability framework, which uses the diffusion of a Markov process on the graph to uncove…
GlnK facilitates the dynamic regulation of bacterial nitrogen assimilation
Adam Gosztolai, Jörg Schumacher, Volker Behrends +5
Ammonium assimilation in E. coli is regulated by two paralogous proteins (GlnB and GlnK), which orchestrate interactions with regulators of gene expression, transport proteins and…
Rigorous bounds on the stationary distributions of the chemical master equation via mathematical programming
Juan Kuntz, Philipp Thomas, Guy-Bart Stan +1
The stochastic dynamics of biochemical networks are usually modelled with the chemical master equation (CME). The stationary distributions of CMEs are seldom solvable analytically,…