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A Dynamical Model of Lipoprotein Metabolism
Elias August, Kim H. Parker, Mauricio Barahona
We present a dynamical model of lipoprotein metabolism derived by combining a cascading process in the blood stream and cellular level regulatory dynamics. We analyse the existence…
Stochastic kinetics of viral capsid assembly based on detailed protein structures
Martin Hemberg, Sophia N. Yaliraki, Mauricio Barahona
We present a generic computational framework for the simulation of viral capsid assembly which is quantitative and specific. Starting from PDB files containing atomic coordinates,…
Perfect Sampling of the Master Equation for Gene Regulatory Networks
Martin Hemberg, Mauricio Barahona
We present a Perfect Sampling algorithm that can be applied to the Master Equation of Gene Regulatory Networks (GRNs). The method recasts Gillespie's Stochastic Simulation Algorith…