20 citations · 33 across the 16 of their papers we have counts for
20 papers
Small Parsimony for Natural Genomes in the DCJ-Indel Model
Daniel Doerr, Cedric Chauve
Reconstructing ancestral gene orders is an important step towards understanding genome evolution. The Small Parsimony Problem (SPP) has been extensively studied in this regard. The…
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models
Cedric Chauve, Yann Ponty, Michael Wallner
Given a set of species whose evolution is represented by a species tree, a gene family is a group of genes having evolved from a single ancestral gene. A gene family evolves along…
Constructing a Consensus Phylogeny from a Leaf-Removal Distance
Cedric Chauve, Mark Jones, Manuel Lafond +2
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possi…
Gene Tree Construction and Correction using SuperTree and Reconciliation
Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk +1
The supertree problem asking for a tree displaying a set of consistent input trees has been largely considered for the reconstruction of species trees. Here, we rather explore this…
An Exact Enumeration of Distance-Hereditary Graphs
Cédric Chauve, Éric Fusy, Jérémie Lumbroso
Distance-hereditary graphs form an important class of graphs, from the theoretical point of view, due to the fact that they are the totally decomposable graphs for the split-decomp…
The gene family-free median of three
Daniel Doerr, Pedro Feijao, Metin Balaban +1
The gene family-free framework for comparative genomics aims at developing methods for gene order analysis that do not require prior gene family assignment, but work directly on a…