2 citations · 5 across the 4 of their papers we have counts for
5 papers
The gene family-free median of three
Daniel Doerr, Pedro Feijao, Metin Balaban +1
The gene family-free framework for comparative genomics aims at developing methods for gene order analysis that do not require prior gene family assignment, but work directly on a…
Chaining fragments in sequences: to sweep or not
Julien Allali, Laetitia Bourgeade, Cedric Chauve
Computing an optimal chain of fragments is a classical problem in string algorithms, with important applications in computational biology. There exist two efficient dynamic program…
Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples
Andrew McPherson, Andrew Roth, Gavin Ha +3
For a genomically unstable cancer, a single tumour biopsy will often contain a mixture of competing tumour clones. These tumour clones frequently differ with respect to their genom…
Assessing the robustness of parsimonious predictions for gene neighborhoods from reconciled phylogenies
Ashok Rajaraman, Cedric Chauve, Yann Ponty
The availability of a large number of assembled genomes opens the way to study the evolution of syntenic character within a phylogenetic context. The DeCo algorithm, recently intro…
Efficient Algorithms for Finding Tucker Patterns
Cedric Chauve, Tamon Stephen, Maria Tamayo
The Consecutive Ones Property is an important notion for binary matrices, both from a theoretical and applied point of view. Tucker gave in 1972 a characterization of matrices that…