2 citations · 5 across the 5 of their papers we have counts for
3 papers · 1 filter
Chaining fragments in sequences: to sweep or not
Julien Allali, Laetitia Bourgeade, Cedric Chauve
Computing an optimal chain of fragments is a classical problem in string algorithms, with important applications in computational biology. There exist two efficient dynamic program…
Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples
Andrew McPherson, Andrew Roth, Gavin Ha +3
For a genomically unstable cancer, a single tumour biopsy will often contain a mixture of competing tumour clones. These tumour clones frequently differ with respect to their genom…
Assessing the robustness of parsimonious predictions for gene neighborhoods from reconciled phylogenies
Ashok Rajaraman, Cedric Chauve, Yann Ponty
The availability of a large number of assembled genomes opens the way to study the evolution of syntenic character within a phylogenetic context. The DeCo algorithm, recently intro…