221 citations · 932 across the 42 of their papers we have counts for
Showing 2003Show all
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q-bio.GN2003
MAVID: Constrained ancestral alignment of multiple sequences
Nicolas Bray, Lior Pachter
We describe a new global multiple alignment program capable of aligning a large number of genomic regions. Our progressive alignment approach incorporates the following ideas: maxi…
math.CO2003★ 1 cited
Reconstructing Trees from Subtree Weights
Lior Pachter, David E Speyer
The tree-metric theorem provides a necessary and sufficient condition for a dissimilarity matrix to be a tree metric, and has served as the foundation for numerous distance-based r…
q-bio.QM2003★ 144 cited
Tropical Geometry of Statistical Models
Lior Pachter, Bernd Sturmfels
This paper presents a unified mathematical framework for inference in graphical models, building on the observation that graphical models are algebraic varieties. From this geometr…