1.9k citations · 4.7k across the 18 of their papers we have counts for
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cs.LG2022★ 5 cited
Granger causal inference on DAGs identifies genomic loci regulating transcription
Rohit Singh, Alexander P. Wu, Bonnie Berger
When a dynamical system can be modeled as a sequence of observations, Granger causality is a powerful approach for detecting predictive interactions between its variables. However,…
cs.LG2019★ 219 cited
Learning protein sequence embeddings using information from structure
Tristan Bepler, Bonnie Berger
Inferring the structural properties of a protein from its amino acid sequence is a challenging yet important problem in biology. Structures are not known for the vast majority of p…
cs.LG2018★ 4 cited
Large-Margin Classification in Hyperbolic Space
Hyunghoon Cho, Benjamin DeMeo, Jian Peng +1
Representing data in hyperbolic space can effectively capture latent hierarchical relationships. With the goal of enabling accurate classification of points in hyperbolic space whi…