3 citations · 4 across the 4 of their papers we have counts for
6 papers
Enabling Privacy-Preserving GWAS in Heterogeneous Human Populations
Sean Simmons, Cenk Sahinalp, Bonnie Berger
The projected increase of genotyping in the clinic and the rise of large genomic databases has led to the possibility of using patient medical data to perform genomewide associatio…
Low-density locality-sensitive hashing boosts metagenomic binning
Yunan Luo, Jianyang Zeng, Bonnie Berger +1
Metagenomic binning is an essential task in analyzing metagenomic sequence datasets. To analyze structure or function of microbial communities from environmental samples, metagenom…
iTreePack: Protein Complex Side-Chain Packing by Dual Decomposition
Jian Peng, Raghavendra Hosur, Bonnie Berger +1
Protein side-chain packing is a critical component in obtaining the 3D coordinates of a structure and drug discovery. Single-domain protein side-chain packing has been thoroughly s…
Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks
Hyunghoon Cho, Bonnie Berger, Jian Peng
Complex biological systems have been successfully modeled by biochemical and genetic interaction networks, typically gathered from high-throughput (HTP) data. These networks can be…
Efficient moment-based inference of admixture parameters and sources of gene flow
Mark Lipson, Po-Ru Loh, Alex Levin +3
The recent explosion in available genetic data has led to significant advances in understanding the demographic histories of and relationships among human populations. It is still…
Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium
Po-Ru Loh, Mark Lipson, Nick Patterson +4
Long-range migrations and the resulting admixtures between populations have been important forces shaping human genetic diversity. Most existing methods for detecting and reconstru…