143 citations · 153 across the 6 of their papers we have counts for
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q-bio.GN2020★ 7 cited
Extraction of long k-mers using spaced seeds
Miika Leinonen, Leena Salmela
The extraction of k-mers from sequencing reads is an important task in many bioinformatics applications, such as all DNA sequence analysis methods based on de Bruijn graphs. These…
q-bio.GN2016★ 143 cited
Accurate selfcorrection of errors in long reads using de Bruijn graphs
Leena Salmela, Riku Walve, Eric Rivals +1
New long read sequencing technologies, like PacBio SMRT and Oxford NanoPore, can produce sequencing reads up to 50,000 bp long but with an error rate of at least 15%. Reducing the…