2 papers
q-bio.GN2020
Extraction of long k-mers using spaced seeds
Miika Leinonen, Leena Salmela
The extraction of k-mers from sequencing reads is an important task in many bioinformatics applications, such as all DNA sequence analysis methods based on de Bruijn graphs. These…
cs.DS2010
Pattern Kits
Travis Gagie, Kalle Karhu, Juha Kärkkäinen +2
Suppose we have just performed searches in a self-index for two patterns and and now we want to search for their concatenation \A B); how can we best make use of our previo…