143 citations · 153 across the 6 of their papers we have counts for
3 papers · 1 filter
Computing all-vs-all MEMs in run-length encoded collections of HiFi reads
Diego Díaz-Domínguez, Simon J. Puglisi, Leena Salmela
We describe an algorithm to find maximal exact matches (MEMs) among HiFi reads with homopolymer errors. The main novelty in our work is that we resort to run-length compression to…
ViQUF: de novo Viral Quasispecies reconstruction using Unitig-based Flow networks
Borja Freire, Susana Ladra, José R. Paramá +1
During viral infection, intrahost mutation and recombination can lead to significant evolution, resulting in a population of viruses that harbor multiple haplotypes. The task of re…
Pattern Kits
Travis Gagie, Kalle Karhu, Juha Kärkkäinen +2
Suppose we have just performed searches in a self-index for two patterns and and now we want to search for their concatenation \A B); how can we best make use of our previo…