activity
20062023
most citedEnhanced sampling methods for molecular dynamics simulations

357 citations · 1.7k across the 74 of their papers we have counts for

collaborators
Showing 2018Show all

10 papers · 1 filter

math.AP2018

Exit event from a metastable state and Eyring-Kramers law for the overdamped Langevin dynamics

Tony Lelièvre, Dorian Le Peutrec, Boris Nectoux

In molecular dynamics, several algorithms have been designed over the past few years to accelerate the exit event from a metastable region of the configuration space. Some of them…

math.PR2018★ 11 cited

On a new class of score functions to estimate tail probabilities of some stochastic processes with Adaptive Multilevel Splitting

Charles-Edouard Bréhier, Tony Lelièvre

We investigate the application of the Adaptive Multilevel Splitting algorithm for the estimation of tail probabilities of solutions of Stochastic Differential Equations evaluated a…

math.PR2018★ 13 cited

Effective dynamics for non-reversible stochastic differential equations: a quantitative study

Frédéric Legoll, Tony Lelièvre, Upanshu Sharma

Coarse-graining is central to reducing dimensionality in molecular dynamics, and is typically characterized by a mapping which projects the full state of the system to a smaller cl…

physics.chem-ph2018★ 7 cited

gen.parRep: a first implementation of the Generalized Parallel Replica dynamics for the long time simulation of metastable biochemical systems

Florent Hédin, Tony Lelièvre

Metastability is one of the major encountered obstacle when performing long molecular dynamics simulations, and many methods were developed to address this challenge. The "Parallel…

math.NA2018

Hybrid Monte Carlo methods for sampling probability measures on submanifolds

Tony Lelièvre, Mathias Rousset, Gabriel Stoltz

Probability measures supported on submanifolds can be sampled by adding an extra momentum variable to the state of the system, and discretizing the associated Hamiltonian dynamics…

math.PR2018★ 9 cited

Central Limit Theorem for stationary Fleming--Viot particle systems in finite spaces

Tony Lelievre, Loucas Pillaud-Vivien, Julien Reygner

We consider the Fleming--Viot particle system associated with a continuous-time Markov chain in a finite space. Assuming irreducibility, it is known that the particle system posses…

math.PR2018★ 1 cited

Pathwise estimates for effective dynamics: the case of nonlinear vectorial reaction coordinates

Tony Lelièvre, Wei Zhang

Effective dynamics using conditional expectation was proposed in [F. Legoll and T. Lelièvre, Nonlinearity, 2010] to approximate the essential dynamics of high-dimensional diffusion…

math.AP2018★ 1 cited

Stochastic homogenization of a scalar viscoelastic model exhibiting stress-strain hysteresis

Thomas Hudson, Frédéric Legoll, Tony Lelièvre

Motivated by rate-independent stress-strain hysteresis observed in filled rubber, this article considers a scalar viscoelastic model in which the constitutive law is random and var…

math.NA2018

Mathematical foundations of Accelerated Molecular Dynamics methods

Tony Lelièvre

The objective of this review article is to present recent results on the mathematical analysis of the Accelerated Dynamics algorithms introduced by A.F. Voter in collaboration with…

math.NA2018

Analysis of a micro-macro acceleration method with minimum relative entropy moment matching

Tony Lelièvre, Giovanni Samaey, Przemysław Zieliński

We analyse convergence of a micro-macro acceleration method for the Monte Carlo simulation of stochastic differential equations with time-scale separation between the (fast) evolut…