activity
20062023
most citedEnhanced sampling methods for molecular dynamics simulations

357 citations · 1.7k across the 74 of their papers we have counts for

collaborators

91 papers

math.NA2023

Reduced basis method for non-symmetric eigenvalue problems: application to the multigroup neutron diffusion equations

Yonah Conjungo Taumhas, Geneviève Dusson, Virginie Ehrlacher +2

In this article, we propose a reduced basis method for parametrized non-symmetric eigenvalue problems arising in the loading pattern optimization of a nuclear core in neutronics. T…

stat.ME2023

Optimal importance sampling for overdamped Langevin dynamics

M. Chak, T. Lelièvre, G. Stoltz +1

Calculating averages with respect to multimodal probability distributions is often necessary in applications. Markov chain Monte Carlo (MCMC) methods to this end, which are based o…

physics.comp-ph2023★ 13 cited

Autoencoders for dimensionality reduction in molecular dynamics: collective variable dimension, biasing and transition states

Zineb Belkacemi, Marc Bianciotto, Herve Minoux +3

The heat shock protein 90 (Hsp90) is a molecular chaperone that controls the folding and activation of client proteins using the free energy of ATP hydrolysis. The Hsp90 active sit…

physics.chem-ph2023★ 1 cited

Computing Surface Reaction Rates by Adaptive Multilevel Splitting Combined with Machine Learning and Ab Initio Molecular Dynamics

Thomas Pigeon, Gabriel Stoltz, Manuel Corral-Valero +4

Computing accurate rate constants for catalytic events occurring at the surface of a given material represents a challenging task with multiple potential applications in chemistry.…

math.NA2023

Unbiasing Hamiltonian Monte Carlo algorithms for a general Hamiltonian function

Tony Lelièvre, Régis Santet, Gabriel Stoltz

Hamiltonian Monte Carlo (HMC) is a Markov chain Monte Carlo method that allows to sample high dimensional probability measures. It relies on the integration of the Hamiltonian dyna…

math.NA2022

Combining machine-learned and empirical force fields with the parareal algorithm: application to the diffusion of atomistic defects

Olga Gorynina, Frederic Legoll, Tony Lelievre +1

We numerically investigate an adaptive version of the parareal algorithm in the context of molecular dynamics. This adaptive variant has been originally introduced in [F. Legoll, T…