activity
20062023
most citedEnhanced sampling methods for molecular dynamics simulations

357 citations · 1.7k across the 74 of their papers we have counts for

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Showing 2010Show all

8 papers · 1 filter

math.PR2010

Some remarks on free energy and coarse-graining

Frederic Legoll, Tony Lelievre

We present recent results on coarse-graining techniques for thermodynamic quantities (canonical averages) and dynamical quantities (averages of path functionals over solutions of o…

math.AP2010

Enhanced sampling of multidimensional free-energy landscapes using adaptive biasing forces

Chris Chipot, Tony Lelièvre

We propose an adaptive biasing algorithm aimed at enhancing the sampling of multimodal measures by Langevin dynamics. The underlying idea consists in generalizing the standard adap…

cond-mat.stat-mech2010★ 80 cited

A multiple replica approach to simulate reactive trajectories

Frédéric Cérou, Arnaud Guyader, Tony Lelièvre +1

A method to generate reactive trajectories, namely equilibrium trajectories leaving a metastable state and ending in another one is proposed. The algorithm is based on simulating i…

cond-mat.stat-mech2010★ 2 cited

Langevin dynamics with constraints and computation of free energy differences

Tony Lelievre, Mathias Rousset, Gabriel Stoltz

In this paper, we consider Langevin processes with mechanical constraints. The latter are a fundamental tool in molecular dynamics simulation for sampling purposes and for the comp…

math-ph2010

A numerical closure approach for kinetic models of polymeric fluids: exploring closure relations for FENE dumbbells

Giovanni Samaey, Tony Lelievre, Vincent Legat

We propose a numerical procedure to study closure approximations for FENE dumbbells in terms of chosen macroscopic state variables, enabling to test straightforwardly which macrosc…

math.NA2010

Reduced basis techniques for stochastic problems

Sébastien Boyaval, Claude Le Bris, Tony Lelièvre +3

We report here on the recent application of a now classical general reduction technique, the Reduced-Basis approach initiated in [C. Prud'homme, D. Rovas, K. Veroy, Y. Maday, A. T.…

math.FA2010

Convergence of a greedy algorithm for high-dimensional convex nonlinear problems

Eric Cances, Virginie Ehrlacher, Tony Lelievre

In this article, we present a greedy algorithm based on a tensor product decomposition, whose aim is to compute the global minimum of a strongly convex energy functional. We prove…

stat.CO2010★ 2 cited

Free Energy Methods for Bayesian Inference: Efficient Exploration of Univariate Gaussian Mixture Posteriors

Nicolas Chopin, Tony Lelievre, Gabriel Stoltz

Because of their multimodality, mixture posterior distributions are difficult to sample with standard Markov chain Monte Carlo (MCMC) methods. We propose a strategy to enhance the…