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q-bio.MN2024
The finest decompositions' architecture of a reaction network
Bryan S. Hernandez, Juan Paolo C. Santos, Patrick Vincent N. Lubenia +1
Biochemical and environmental modeling typically relies on reaction networks to represent complex transformations. While the Linkage Class Decomposition (LCD) partitions networks b…
q-bio.MN2024
Embedding-based comparison of reaction networks of Wnt signaling
Bryan S. Hernandez, Patrick Vincent N. Lubenia, Eduardo R. Mendoza
This work introduces a new method for comparing two reaction networks of the same or closely related systems through their embedded networks in terms of the shared set of species.…