3 papers
The finest decompositions' architecture of a reaction network
Bryan S. Hernandez, Juan Paolo C. Santos, Patrick Vincent N. Lubenia +1
Biochemical and environmental modeling typically relies on reaction networks to represent complex transformations. While the Linkage Class Decomposition (LCD) partitions networks b…
Embedding-based comparison of reaction networks of Wnt signaling
Bryan S. Hernandez, Patrick Vincent N. Lubenia, Eduardo R. Mendoza
This work introduces a new method for comparing two reaction networks of the same or closely related systems through their embedded networks in terms of the shared set of species.…
Equilibria decomposition-based comparison of reaction networks of Wnt signaling
Bryan S. Hernandez, Patrick Vincent N. Lubenia, Eduardo R. Mendoza
The Wnt signaling pathway plays a critical role in various biochemical processes, including embryonic development, tissue homeostasis, and cancer progression. In this paper, we con…