4 papers
Computational framework NetBiF predicts and classifies steady-state bifurcations in biochemical systems via reaction network structure
Al Jay Lan J. Alamin, Bryan S. Hernandez
Dynamics of biochemical systems are dictated by the stoichiometry and kinetics of reaction networks. These systems may admit positive steady states that could undergo qualitative c…
CRITERIA: A network decomposition and elementary flux mode translation-based tool for computing equilibria of biochemical systems
Exequiel Jun V. Villejo, Aurelio A. de los Reyes, Bryan S. Hernandez
Understanding how biochemical systems settle into stable states, such as how protein concentrations reach equilibrium, is central to explaining cellular behavior and designing synt…
The Long-Term Impact of Direct Capture Approaches to Carbon Dioxide Removal
Al Jay Lan J. Alamin, Melquezedec James T. Cruz, Bryan S. Hernandez +1
Understanding the similarities and differences of the long term impact of different carbon dioxide removal (CDR) techniques is essential in determining the most effective and susta…
Positive steady states of a class of power law systems with independent decompositions
Al Jay Lan J. Alamin, Bryan S. Hernandez
Power law systems have been studied extensively due to their wide-ranging applications, particularly in chemistry. In this work, we focus on power law systems that can be decompose…