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math.DS2026
Computational framework NetBiF predicts and classifies steady-state bifurcations in biochemical systems via reaction network structure
Al Jay Lan J. Alamin, Bryan S. Hernandez
Dynamics of biochemical systems are dictated by the stoichiometry and kinetics of reaction networks. These systems may admit positive steady states that could undergo qualitative c…
math.DS2026
CRITERIA: A network decomposition and elementary flux mode translation-based tool for computing equilibria of biochemical systems
Exequiel Jun V. Villejo, Aurelio A. de los Reyes, Bryan S. Hernandez
Understanding how biochemical systems settle into stable states, such as how protein concentrations reach equilibrium, is central to explaining cellular behavior and designing synt…