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20222026
most citedNovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics

2 citations · 6 across the 12 of their papers we have counts for

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q-bio.QM2026

MetaGEM: Bottom-Up Reconstruction of Genome-Scale Metabolic Networks via Deep Enzyme-Metabolite Anchoring

Weiyu Xiao, Jiangbin Zheng, Stan Z. Li

Genome-scale metabolic models (GEMs) are essential tools for systems biology and rational chassis design, but conventional top-down reconstruction depends heavily on sequence homol…

q-bio.CB2026

TCRTransBench: A Comprehensive Benchmark for Bidirectional TCR-Peptide Sequence Generation

Yiming Wang, Weiyu Xiao, Jiangbin Zheng +1

T-cell receptor (TCR) interactions with antigenic peptides underpin adaptive immunity and are pivotal for personalized immunotherapy and vaccine development. Despite recent progres…