3 papers
cs.LG2026
BioM-JEPA: joint-embedding prediction of graph-connected gene blocks in single cells
Yuhao Wang, Zelin Zang, Yuxuan Liu +2
Single-cell transcriptomes are sparse observations of coordinated biological programmes, yet most self-supervised models learn by reconstructing individual genes. Here we present B…
cs.LG2025
Learning Cell-Aware Hierarchical Multi-Modal Representations for Robust Molecular Modeling
Mengran Li, Zelin Zang, Wenbin Xing +4
Understanding how chemical perturbations propagate through biological systems is essential for robust molecular property prediction. While most existing methods focus on chemical s…
q-bio.PE2024
A Review of BioTree Construction in the Context of Information Fusion: Priors, Methods, Applications and Trends
Zelin Zang, Yongjie Xu, Chenrui Duan +4
Biological tree (BioTree) analysis is a foundational tool in biology, enabling the exploration of evolutionary and differentiation relationships among organisms, genes, and cells.…