3 papers
cs.LG2026
Dynamics-inspired Structure Hallucination for Protein-protein Interaction Modeling
Fang Wu, Stan Z. Li
Protein-protein interaction (PPI) represents a central challenge within the biology field, and accurately predicting the consequences of mutations in this context is crucial for dr…
q-bio.GN2025
MergeDNA: Context-aware Genome Modeling with Dynamic Tokenization through Token Merging
Siyuan Li, Kai Yu, Anna Wang +7
Modeling genomic sequences faces two unsolved challenges: the information density varies widely across different regions, while there is no clearly defined minimum vocabulary unit.…
cs.LG2025
Life-Code: Central Dogma Modeling with Multi-Omics Sequence Unification
Zicheng Liu, Siyuan Li, Zhiyuan Chen +6
The interactions between DNA, RNA, and proteins are fundamental to biological processes, as illustrated by the central dogma of molecular biology. Although modern biological pre-tr…