423 citations · 2.3k across the 33 of their papers we have counts for
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cond-mat.soft2020★ 12 cited
Measuring internal forces in single-stranded DNA: Application to a DNA force clamp
Megan C. Engel, Flavio Romano, Ard A. Louis +1
We present a new method for calculating internal forces in DNA structures using coarse-grained models and demonstrate its utility with the oxDNA model. The instantaneous forces on…
cond-mat.soft2020★ 47 cited
Designing patchy interactions to self-assemble arbitrary structures
Flavio Romano, John Russo, Lukáš Kroc +1
One of the fundamental goals of nanotechnology is to exploit selective and directional interactions between molecules to design particles that self-assemble into desired structures…
cond-mat.soft2020★ 31 cited
The oxDNA coarse-grained model as a tool to simulate DNA origami
Jonathan P. K. Doye, Hannah Fowler, Domen Prešern +12
This chapter introduces how to run molecular dynamics simulations for DNA origami using the oxDNA coarse-grained model.