423 citations · 2.3k across the 33 of their papers we have counts for
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Coarse-graining DNA for simulations of DNA nanotechnology
Jonathan P. K. Doye, Thomas E. Ouldridge, Ard A. Louis +8
To simulate long time and length scale processes involving DNA it is necessary to use a coarse-grained description. Here we provide an overview of different approaches to such coar…
DNA hybridization kinetics: zippering, internal displacement and sequence dependence
Thomas E. Ouldridge, Petr Šulc, Flavio Romano +2
While the thermodynamics of DNA hybridization is well understood, much less is known about the kinetics of this classic system. Filling this gap in our understanding has new urgenc…
Computing phase diagrams for a quasicrystal-forming patchy-particle system
Aleks Reinhardt, Flavio Romano, Jonathan P. K. Doye
We introduce an approach to computing the free energy of quasicrystals, which we use to calculate phase diagrams for systems of two-dimensional patchy particles with five regularly…