156 citations · 381 across the 4 of their papers we have counts for
4 papers
Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots
Mateusz Sikora, Joanna I. Sułkowska, Marek Cieplak
A new theoretical survey of proteins' resistance to constant speed stretching is performed for a set of 17 134 proteins as described by a structure-based model. The proteins select…
How knots influence properties of proteins
Joanna I. Sułkowska, Piotr Sułkowski, P. Szymczak +1
Molecular dynamics studies within a coarse-grained structure based model were used on two similar proteins belonging to the transcarbamylase family to probe the effects in the nati…
Tightening of knots in proteins
Joanna I. Sułkowska, Piotr Sułkowski, Piotr Szymczak +1
We perform theoretical studies of stretching of 20 proteins with knots within a coarse grained model. The knot's ends are found to jump to well defined sequential locations that ar…
Thermal unfolding of proteins
Marek Cieplak, Joanna I. Sulkowska
Thermal unfolding of proteins is compared to folding and mechanical stretching in a simple topology-based dynamical model. We define the unfolding time and demonstrate its low-temp…