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q-bio.GN2024
OmniGenBench: Automating Large-scale in-silico Benchmarking for Genomic Foundation Models
Heng Yang, Jack Cole, Ke Li
The advancements in artificial intelligence in recent years, such as Large Language Models (LLMs), have fueled expectations for breakthroughs in genomic foundation models (GFMs). T…
q-bio.GN2024
Bridging Sequence-Structure Alignment in RNA Foundation Models
Heng Yang, Renzhi Chen, Ke Li
The alignment between RNA sequences and structures in foundation models (FMs) has yet to be thoroughly investigated. Existing FMs have struggled to establish sequence-structure ali…