2 citations · 3 across the 3 of their papers we have counts for
3 papers
cs.DS2023
Wheeler maps
Andrej Baláz, Travis Gagie, Adrián Goga +4
Motivated by challenges in pangenomic read alignment, we propose a generalization of Wheeler graphs that we call Wheeler maps. A Wheeler map stores a text and an assignme…
cs.DS2022★ 1 cited
MARIA: Multiple-alignment -index with aggregation
Adrián Goga, Andrej Baláž, Alessia Petescia +1
There now exist compact indexes that can efficiently list all the occurrences of a pattern in a dataset consisting of thousands of genomes, or even all the occurrences of all the p…
q-bio.GN2021★ 2 cited
SnakeLines: integrated set of computational pipelines for sequencing reads
Jaroslav Budis, Werner Krampl, Marcel Kucharik +12
Background: With the rapid growth of massively parallel sequencing technologies, still more laboratories are utilizing sequenced DNA fragments for genomic analyses. Interpretation…