activity
20212023
most citedSnakeLines: integrated set of computational pipelines for sequencing reads

2 citations · 3 across the 3 of their papers we have counts for

collaborators
Showing cs.DSShow all

2 papers · 1 filter

cs.DS2023

Wheeler maps

Andrej Baláz, Travis Gagie, Adrián Goga +4

Motivated by challenges in pangenomic read alignment, we propose a generalization of Wheeler graphs that we call Wheeler maps. A Wheeler map stores a text and an assignme…

cs.DS2022★ 1 cited

MARIA: Multiple-alignment -index with aggregation

Adrián Goga, Andrej Baláž, Alessia Petescia +1

There now exist compact indexes that can efficiently list all the occurrences of a pattern in a dataset consisting of thousands of genomes, or even all the occurrences of all the p…