activity
20122018
most citedReconstruction of Arbitrary Biochemical Reaction Networks: A Compressive Sensing Approach

25 citations · 50 across the 9 of their papers we have counts for

collaborators

9 papers

physics.soc-ph2018

Global Network Prediction from Local Node Dynamics

Neave O'Clery, Ye Yuan, Guy-Bart Stan +1

The study of dynamical systems on networks, describing complex interactive processes, provides insight into how network structure affects global behaviour. Yet many methods for net…

eess.SY2017★ 5 cited

Distributed Kalman filtering with minimum-time consensus algorithm

Ye Yuan, Ling Shi, Jun Liu +3

Fueled by applications in sensor networks, these years have witnessed a surge of interest in distributed estimation and filtering. A new approach is hereby proposed for the Distrib…

eess.SY2015★ 2 cited

Identifying Biochemical Reaction Networks From Heterogeneous Datasets

Wei Pan, Ye Yuan, Lennart Ljung +2

In this paper, we propose a new method to identify biochemical reaction networks (i.e. both reactions and kinetic parameters) from heterogeneous datasets. Such datasets can contain…

eess.SY2014

On minimal realisations of dynamical structure functions

Ye Yuan, Keith Glover, Jorge Goncalvees

Motivated by the fact that transfer functions do not contain structural information about networks, dynamical structure functions were introduced to capture causal relationships be…

math.OC2014★ 1 cited

A Sparse Bayesian Approach to the Identification of Nonlinear State-Space Systems

Wei Pan, Ye Yuan, Jorge Gonçalves +1

This technical note considers the identification of nonlinear discrete-time systems with additive process noise but without measurement noise. In particular, we propose a method an…

eess.SY2013★ 5 cited

Network Reconstruction from Intrinsic Noise

David Hayden, Ye Yuan, Jorge Goncalves

This paper considers the problem of inferring an unknown network of dynamical systems driven by unknown, intrinsic, noise inputs. Equivalently we seek to identify direct causal dep…

eess.SY2012★ 2 cited

Minimal realization of the dynamical structure function and its application to network reconstruction

Ye Yuan, Guy-Bart Stan, Sean Warnick +1

Network reconstruction, i.e., obtaining network structure from data, is a central theme in systems biology, economics and engineering. In some previous work, we introduced dynamica…

math.DS2012★ 10 cited

Robust Network Reconstruction in Polynomial Time

David Hayden, Ye Yuan, Jorge Gonçalves

This paper presents an efficient algorithm for robust network reconstruction of Linear Time-Invariant (LTI) systems in the presence of noise, estimation errors and unmodelled nonli…

eess.SY2012★ 25 cited

Reconstruction of Arbitrary Biochemical Reaction Networks: A Compressive Sensing Approach

Wei Pan, Ye Yuan, Guy-Bart Stan

Reconstruction of biochemical reaction networks is a central topic in systems biology which raises crucial theoretical challenges in system identification. Nonlinear Ordinary Diffe…