53 citations · 157 across the 21 of their papers we have counts for
4 papers · 1 filter
Shaping Pulses to Control Bistable Biological Systems
Aivar Sootla, Diego Oyarzun, David Angeli +1
In this paper we study how to shape temporal pulses to switch a bistable system between its stable steady states. Our motivation for pulse-based control comes from applications in…
Distributed Reconstruction of Nonlinear Networks: An ADMM Approach
Wei Pan, Aivar Sootla, Guy-Bart Stan
In this paper, we present a distributed algorithm for the reconstruction of large-scale nonlinear networks. In particular, we focus on the identification from time-series data of t…
On Projection-Based Model Reduction of Biochemical Networks-- Part II: The Stochastic Case
Aivar Sootla, James Anderson
In this paper, we consider the problem of model order reduction of stochastic biochemical networks. In particular, we reduce the order of (the number of equations in) the Linear No…
On Projection-Based Model Reduction of Biochemical Networks-- Part I: The Deterministic Case
Aivar Sootla, James Anderson
This paper addresses the problem of model reduction for dynamical system models that describe biochemical reaction networks. Inherent in such models are properties such as stabilit…