38 citations · 159 across the 14 of their papers we have counts for
4 papers · 1 filter
CytoITMprobe: a network information flow plugin for Cytoscape
Aleksandar Stojmirović, Alexander Bliskovsky, Yi-Kuo Yu
To provide the Cytoscape users the possibility of integrating ITM Probe into their workflows, we developed CytoITMprobe, a new Cytoscape plugin. CytoITMprobe maintains all the desi…
Robust and accurate data enrichment statistics via distribution function of sum of weights
Aleksandar Stojmirović, Yi-Kuo Yu
Term enrichment analysis facilitates biological interpretation by assigning to experimentally/computationally obtained data annotation associated with terms from controlled vocabul…
Geometric Aspects of Biological Sequence Comparison
Aleksandar Stojmirović, Yi-Kuo Yu
We propose a general framework for converting global and local similarities between biological sequences to quasi-metrics. In contrast to previous works, our formulation allows asy…
PFMFind: a system for discovery of peptide homology and function
Aleksandar Stojmirović, Peter Andreae, Mike Boland +2
Protein Fragment Motif Finder (PFMFind) is a system that enables efficient discovery of relationships between short fragments of protein sequences using similarity search. It suppo…