38 citations · 159 across the 14 of their papers we have counts for
4 papers · 1 filter
Information Flow in Interaction Networks
Aleksandar Stojmirović, Yi-Kuo Yu
Interaction networks, consisting of agents linked by their interactions, are ubiquitous across many disciplines of modern science. Many methods of analysis of interaction networks…
ppiTrim: Constructing non-redundant and up-to-date interactomes
Aleksandar Stojmirović, Yi-Kuo Yu
Robust advances in interactome analysis demand comprehensive, non-redundant and consistently annotated datasets. By non-redundant, we mean that the accounting of evidence for every…
ITM Probe: analyzing information flow in protein networks
Aleksandar Stojmirović, Yi-Kuo Yu
Summary: Founded upon diffusion with damping, ITM Probe is an application for modeling information flow in protein interaction networks without prior restriction to the sub-network…
Information flow in interaction networks II: channels, path lengths and potentials
Aleksandar Stojmirović, Yi-Kuo Yu
In our previous publication, a framework for information flow in interaction networks based on random walks with damping was formulated with two fundamental modes: emitting and abs…