23 citations · 35 across the 3 of their papers we have counts for
3 papers
cs.IR2008★ 5 cited
Quasi-metrics, Similarities and Searches: aspects of geometry of protein datasets
Aleksandar Stojmirovic
A quasi-metric is a distance function which satisfies the triangle inequality but is not symmetric: it can be thought of as an asymmetric metric. The central result of this thesis,…
q-bio.BM2008★ 7 cited
The effectiveness of position- and composition-specific gap costs for protein similarity searches
Aleksandar Stojmirović, E. Michael Gertz, Stephen F. Altschul +1
The flexibility in gap cost enjoyed by Hidden Markov Models (HMMs) is expected to afford them better retrieval accuracy than position-specific scoring matrices (PSSMs). We attempt…
math.GN2003★ 23 cited
Quasi-metric spaces with measure
Aleksandar Stojmirovic
The phenomenon of concentration of measure on high dimensional structures is usually stated in terms of a metric space with a Borel measure, also called an mm-space. We extend some…