402 citations · 8.7k across the 191 of their papers we have counts for
3 papers · 2 filters
Facilitated diffusion on mobile DNA: configurational traps and sequence heterogeneity
C. A. Brackley, M. E. Cates, D. Marenduzzo
We present Brownian dynamics simulations of the facilitated diffusion of a protein, modelled as a sphere with a binding site on its surface, along DNA, modelled as a semi-flexible…
Sedimentation of Knotted Polymers
Joonas Piili, Davide Marenduzzo, Kimmo Kaski +1
We investigate the sedimentation of knotted polymers by means of stochastic rotation dynamics, a molecular dynamics algorithm that takes hydrodynamics fully into account. We show t…
Cytoplasmic streaming in plant cells: the role of wall slip
K. Wolff, D. Marenduzzo, M. E. Cates
We present a computer simulation study, via lattice Boltzmann simulations, of a microscopic model for cytoplasmic streaming in algal cells such as those of Chara corallina. We mode…