309 citations · 911 across the 19 of their papers we have counts for
Showing 2012 · physics.bio-phShow all
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physics.bio-ph2012★ 65 cited
Facilitated diffusion on mobile DNA: configurational traps and sequence heterogeneity
C. A. Brackley, M. E. Cates, D. Marenduzzo
We present Brownian dynamics simulations of the facilitated diffusion of a protein, modelled as a sphere with a binding site on its surface, along DNA, modelled as a semi-flexible…
physics.bio-ph2012★ 4 cited
Sedimentation of Knotted Polymers
Joonas Piili, Davide Marenduzzo, Kimmo Kaski +1
We investigate the sedimentation of knotted polymers by means of stochastic rotation dynamics, a molecular dynamics algorithm that takes hydrodynamics fully into account. We show t…