309 citations · 911 across the 19 of their papers we have counts for
3 papers · 1 filter
Facilitated diffusion on mobile DNA: configurational traps and sequence heterogeneity
C. A. Brackley, M. E. Cates, D. Marenduzzo
We present Brownian dynamics simulations of the facilitated diffusion of a protein, modelled as a sphere with a binding site on its surface, along DNA, modelled as a semi-flexible…
Bulk rheology and microrheology of active fluids
G. Foffano, J. S. Lintuvuori, A. N. Morozov +3
We simulate macroscopic shear experiments in active nematics and compare them with microrheology simulations where a spherical probe particle is dragged through an active fluid. In…
Sedimentation of Knotted Polymers
Joonas Piili, Davide Marenduzzo, Kimmo Kaski +1
We investigate the sedimentation of knotted polymers by means of stochastic rotation dynamics, a molecular dynamics algorithm that takes hydrodynamics fully into account. We show t…