Nucleation rates from small scale atomistic simulations and transition state theory
arXiv:2101.09234 · doi:10.1063/5.0063398
Abstract
The evaluation of nucleation rates from molecular dynamics trajectories is hampered by the slow nucleation time scale and impact of finite size effects. Here, we show that accurate nucleation rates can be obtained in a very general fashion relying only on the free energy barrier, transition state theory (TST), and a simple dynamical correction for diffusive recrossing. In this setup, the time scale problem is overcome by using enhanced sampling methods, in casu metadynamics, whereas the impact of finite size effects can be naturally circumvented by reconstructing the free energy surface from an appropriate ensemble. Approximations from classical nucleation theory are avoided. We demonstrate the accuracy of the approach by calculating macroscopic rates of droplet nucleation from argon vapor, spanning sixteen orders of magnitude and in excellent agreement with literature results, all from simulations of very small (512 atom) systems.
References in corpus (29)
- Canonical sampling through velocity-rescaling
- Escaping free-energy minima
- PLUMED 2: New feathers for an old bird
- Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method
- From Metadynamics to Dynamics
- Accurate sampling using Langevin dynamics
- Metadynamics with adaptive Gaussians
- Direct Calculation of Ice Homogeneous Nucleation Rate for a Molecular Model of Water
- Stochastic thermostats: comparison of local and global schemes
- Large Scale Molecular Dynamics Simulations of Homogeneous Nucleation
- Enhancing entropy and enthalpy fluctuations to drive crystallization in atomistic simulations
- Microscopic Mechanism and Kinetics of Ice Formation at Complex Interfaces: Zooming in on Kaolinite
- Neural network based path collective variables for enhanced sampling of phase transformations
- Homogeneous Bubble Nucleation driven by local hot spots: a Molecular Dynamics Study
- Navigating at Will on the Water Phase Diagram
- Direct Simulations of Homogeneous Bubble Nucleation: Agreement with CNT and no Local Hot Spots
- The Seven Deadly Sins: when computing crystal nucleation rates, the devil is in the details
- Forward Flux Sampling Calculation of Homogeneous Nucleation Rates from Aqueous NaCl Solutions
- Overcoming timescale and finite-size limitations to compute nucleation rates from small scale Well Tempered Metadynamics simulations
- Finding Efficient Collective Variables: The Case of Crystallization
- Collective Variables for the Study of Crystallization
- CO2 packing polymorphism under pressure: mechanism and thermodynamics of the I-III polymorphic transition
- Theoretical prediction of the homogeneous ice nucleation rate: disentangling thermodynamics and kinetics
- Reaction coordinates and rate constants for liquid droplet nucleation: quantifying the interplay between driving force and memory
- Phase equilibrium of liquid water and hexagonal ice from enhanced sampling molecular dynamics simulations
- Bridging the gap between atomistic and macroscopic models of homogeneous nucleation
- Role of pre-ordered liquid in the selection mechanism of crystal polymorphs during nucleation
- Nucleation rates from small scale atomistic simulations and transition state theory
- Reweighted Jarzynski sampling: Acceleration of rare events and free energy calculation with a bias potential learned from nonequilibrium work
Cited by in corpus (5)
- The Seven Deadly Sins: when computing crystal nucleation rates, the devil is in the details
- Driving and characterizing nucleation of urea and glycine polymorphs in water
- Nucleation rates from small scale atomistic simulations and transition state theory
- Extending and validating bubble nucleation rate predictions in a Lennard-Jones fluid with enhanced sampling methods and transition state theory
- Reweighted Jarzynski sampling: Acceleration of rare events and free energy calculation with a bias potential learned from nonequilibrium work