Overcoming timescale and finite-size limitations to compute nucleation rates from small scale Well Tempered Metadynamics simulations
arXiv:1508.01642 · doi:10.1063/1.4966265
Abstract
Condensation of a liquid droplet from a supersaturated vapour phase is initiated by a prototypical nucleation event. As such it is challenging to compute its rate from atomistic molecular dynamics simulations. In fact at realistic supersaturation conditions condensation occurs on time scales that far exceed what can be reached with conventional molecular dynamics methods. Another known problem in this context is the distortion of the free energy profile associated to nucleation due to the small, finite size of typical simulation boxes. In this work the problem of time scale is addressed with a recently developed enhanced sampling method while contextually correcting for finite size effects. We demonstrate our approach by studying the condensation of argon, and showing that characteristic nucleation times of the order of magnitude of hours can be reliably calculated, approaching realistic supersaturation conditions, thus bridging the gap between what standard molecular dynamics simulations can do and real physical systems.
9 pages, 7 figures, additional figures and data provided as supplementary information. Submitted to the Journal of Chemical Physiscs
References in corpus (5)
- Canonical sampling through velocity-rescaling
- Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method
- The role of water and steric constraints in the kinetics of cavity-ligand unbinding
- Molecular Dynamics Simulations of the Nucleation of Water: Determining the Sticking Probability and Formation Energy of a Cluster
- DNA denaturation bubbles: free-energy landscape and nucleation/closure rates
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