Invariant Manifolds and Rate Constants in Driven Chemical Reactions
arXiv:1903.06966 · doi:10.1021/acs.jpcb.8b10541
Abstract
Reaction rates of chemical reactions under nonequilibrium conditions can be determined through the construction of the normally hyperbolic invariant manifold (NHIM) [and moving dividing surface (DS)] associated with the transition state trajectory. Here, we extend our recent methods by constructing points on the NHIM accurately even for multidimensional cases. We also advance the implementation of machine learning approaches to construct smooth versions of the NHIM from a known high-accuracy set of its points. That is, we expand on our earlier use of neural nets, and introduce the use of Gaussian process regression for the determination of the NHIM. Finally, we compare and contrast all of these methods for a challenging two-dimensional model barrier case so as to illustrate their accuracy and general applicability.
arXiv comment28 pages, 13 figures, table of contents figure
References in corpus (26)
- Fast and Accurate Modeling of Molecular Atomization Energies with Machine Learning
- Mayavi: a package for 3D visualization of scientific data
- Machine Learning Energies of 2 M Elpasolite (ABCD) Crystals
- Lagrangian Descriptors: A Method for Revealing Phase Space Structures of General Time Dependent Dynamical Systems
- Efficient non-parametric fitting of potential energy surfaces for polyatomic molecules with Gaussian processes
- The Transition State in a Noisy Environment
- Gaussian Process Model for Collision Dynamics of Complex Molecules
- Bayesian optimization for the inverse scattering problem in quantum reaction dynamics
- Stochastic Transition States: Reaction Geometry amidst Noise
- Homoclinic chaos in the dynamics of a general Bianchi IX model
- Identifying reactive trajectories using a moving transition state
- Multiple Transition States and Roaming in Ion-Molecule Reactions: a Phase Space Perspective
- Stability and Decay Rates of Non-Isotropic Attractive Bose-Einstein Condensates
- Obtaining time-dependent multi-dimensional dividing surfaces using Lagrangian descriptors
- Chemical dynamics between wells across a time-dependent barrier: Self-similarity in the Lagrangian descriptor and reactive basins
- Chaotic Dynamics in Multidimensional Transition States
- Chemical reactions induced by oscillating external fields in weak thermal environments
- Transition state trajectory stability determines barrier crossing rates in chemical reactions induced by time-dependent oscillating fields
- Persistence of transition state structure in chemical reactions driven by fields oscillating in time
- Gaussian Process Model for Extrapolation of Scattering Observables for Complex Molecules: from Benzene to Benzonitrile
- Reaction dynamics through kinetic transition states
- Binary contraction method for the construction of time-dependent dividing surfaces in driven chemical reactions
- Neural network approach to time-dependent dividing surfaces in classical reaction dynamics
- Transition state theory for wave packet dynamics. II. Thermal decay of Bose-Einstein condensates with long-range interaction
- Transition states and thermal collapse of dipolar Bose-Einstein condensates
- Transition state theory for wave packet dynamics. I. Thermal decay in metastable Schrödinger systems
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- Thermal decay rates of an activated complex in a driven model chemical reaction
- Transition criteria and phase space structures in a three degree of freedom system with dissipation
- Revealing the phase space structure of Hamiltonian systems using the action