Hierarchical Visualization of Materials Space with Graph Convolutional Neural Networks
arXiv:1807.03404 · doi:10.1063/1.5047803
Abstract
The combination of high throughput computation and machine learning has led to a new paradigm in materials design by allowing for the direct screening of vast portions of structural, chemical, and property space. The use of these powerful techniques leads to the generation of enormous amounts of data, which in turn calls for new techniques to efficiently explore and visualize the materials space to help identify underlying patterns. In this work, we develop a unified framework to hierarchically visualize the compositional and structural similarities between materials in an arbitrary material space with representations learned from different layers of graph convolutional neural networks. We demonstrate the potential for such a visualization approach by showing that patterns emerge automatically that reflect similarities at different scales in three representative classes of materials: perovskites, elemental boron, and general inorganic crystals, covering material spaces of different compositions, structures, and both. For perovskites, elemental similarities are learned that reflects multiple aspects of atom properties. For elemental boron, structural motifs emerge automatically showing characteristic boron local environments. For inorganic crystals, the similarity and stability of local coordination environments are shown combining different center and neighbor atoms. The method could help transition to a data-centered exploration of materials space in automated materials design.
arXiv comment22 + 7 pages, 6 + 5 figures
References in corpus (21)
- Neural Message Passing for Quantum Chemistry
- Crystal Graph Convolutional Neural Networks for an Accurate and Interpretable Prediction of Material Properties
- On representing chemical environments
- Fast and Accurate Modeling of Molecular Atomization Energies with Machine Learning
- SchNet - a deep learning architecture for molecules and materials
- A General-Purpose Machine Learning Framework for Predicting Properties of Inorganic Materials
- Molecular Graph Convolutions: Moving Beyond Fingerprints
- Quantum-Chemical Insights from Deep Tensor Neural Networks
- Big Data of Materials Science - Critical Role of the Descriptor
- Convolutional Networks on Graphs for Learning Molecular Fingerprints
- Comparing molecules and solids across structural and alchemical space
- Universal Fragment Descriptors for Predicting Electronic Properties of Inorganic Crystals
- How to represent crystal structures for machine learning: towards fast prediction of electronic properties
- Discovery of low thermal conductivity compounds with first-principles anharmonic lattice dynamics calculations and Bayesian optimization
- Machine Learning Energies of 2 M Elpasolite (ABCD) Crystals
- Alchemical and structural distribution based representation for improved QML
- Materials Cartography: Representing and Mining Material Space Using Structural and Electronic Fingerprints
- Data-driven learning of total and local energies in elemental boron
- Atom2Vec: learning atoms for materials discovery
- Efficient nonparametric -body force fields from machine learning
- Metrics for measuring distances in configuration spaces
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- Developing an improved Crystal Graph Convolutional Neural Network framework for accelerated materials discovery
- Graph Dynamical Networks for Unsupervised Learning of Atomic Scale Dynamics in Materials
- PiNN: A Python Library for Building Atomic Neural Networks of Molecules and Materials
- Predicting charge density distribution of materials using a local-environment-based graph convolutional network
- Artificial Intelligence in Material Engineering: A review on applications of AI in Material Engineering
- Calibrating DFT formation enthalpy calculations by multi-fidelity machine learning
- First-Principles Prediction of Electronic Transport in Experimental Semiconductor Heterostructures via Physics-Based Machine Learning
- Screening and understanding Li adsorption on 2-dimensional metallic materials by learning physics
- A Tailored Convolutional Neural Network for Nonlinear Manifold Learning of Computational Physics Data using Unstructured Spatial Discretizations
- Bridging Text and Crystal Structures: Literature-driven Contrastive Learning for Materials Science