Reactions, Diffusion and Volume Exclusion in a Heterogeneous System of Interacting Particles
arXiv:1705.00004 · doi:10.1103/PhysRevE.97.062137
Abstract
Complex biological and physical transport processes are often described through systems of interacting particles. Excluded-volume effects on these transport processes are well studied, however the interplay between volume exclusion and reactions between heterogenous particles is less well known. In this paper we develop a novel framework for modeling reaction-diffusion processes which directly incorporates volume exclusion. From an off-lattice microscopic individual based model we use the Fokker--Planck equation and the method of matched asymptotic expansions to derive a low-dimensional macroscopic system of nonlinear partial differential equations describing the evolution of the particles. A biologically motivated, hybrid model of chemotaxis with volume exclusion is explored, where reactions occur at rates dependent upon the chemotactic environment. Further, we show that for reactions due to contact interactions the appropriate reaction term in the macroscopic model is of lower order in the asymptotic expansion than the nonlinear diffusion term. However, we find that the next reaction term in the expansion is needed to ensure good agreement with simulations of the microscopic model. Our macroscopic model allows for more direct parameterization to experimental data than the models available to date.
13 pages, 4 figures
References in corpus (6)
- The totally asymmetric simple exclusion process on networks
- Diffusion of multiple species with excluded-volume effects
- Generic transport mechanisms for molecular traffic in cellular protrusions
- Exclusion processes: short range correlations induced by adhesion and contact interactions
- Particle-based and Meshless Methods with Aboria
- Moran-type bounds for the fixation probability in a frequency-dependent Wright-Fisher model