MOSAIK: A hash-based algorithm for accurate next-generation sequencing read mapping

Abstract

This paper presents an accurate short-read mapper for next-generation sequencing data which is widely used in the 1000 Genomes Project, and human clinical and other species genome studies.

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Cited by in corpus (7)

• SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
• Nanopore Sequencing Technology and Tools for Genome Assembly: Computational Analysis of the Current State, Bottlenecks and Future Directions
• Technology dictates algorithms: Recent developments in read alignment
• Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage
• Sramm: short read alignment mapping metrics
• Accelerating the Understanding of Life's Code Through Better Algorithms and Hardware Design
• A Big Data Approach for Sequences Indexing on the Cloud via Burrows Wheeler Transform