4.1k citations · 4.7k across the 3 of their papers we have counts for
3 papers
q-bio.GN2013★ 295 cited
MOSAIK: A hash-based algorithm for accurate next-generation sequencing read mapping
Wan-Ping Lee, Michael Stromberg, Alistair Ward +3
This paper presents an accurate short-read mapper for next-generation sequencing data which is widely used in the 1000 Genomes Project, and human clinical and other species genome…
q-bio.GN2012★ 274 cited
SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
Mengyao Zhao, Wan-Ping Lee, Erik Garrison +1
Summary: The Smith Waterman (SW) algorithm, which produces the optimal pairwise alignment between two sequences, is frequently used as a key component of fast heuristic read mappin…
q-bio.GN2012★ 4.1k cited
Haplotype-based variant detection from short-read sequencing
Erik Garrison, Gabor Marth
The direct detection of haplotypes from short-read DNA sequencing data requires changes to existing small-variant detection methods. Here, we develop a Bayesian statistical framewo…