295 citations · 569 across the 3 of their papers we have counts for
3 papers
SEAGLE: A Scalable Exact Algorithm for Large-Scale Set-Based GxE Tests in Biobank Data
Jocelyn T. Chi, Ilse C. F. Ipsen, Tzu-Hung Hsiao +5
The explosion of biobank data offers immediate opportunities for gene-environment (GxE) interaction studies of complex diseases because of the large sample sizes and the rich colle…
MOSAIK: A hash-based algorithm for accurate next-generation sequencing read mapping
Wan-Ping Lee, Michael Stromberg, Alistair Ward +3
This paper presents an accurate short-read mapper for next-generation sequencing data which is widely used in the 1000 Genomes Project, and human clinical and other species genome…
SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
Mengyao Zhao, Wan-Ping Lee, Erik Garrison +1
Summary: The Smith Waterman (SW) algorithm, which produces the optimal pairwise alignment between two sequences, is frequently used as a key component of fast heuristic read mappin…